# biology/vsearch - The NetBSD Packages Collection

Versatile open-source tool for metagenomics

    VSEARCH supports de novo and reference based chimera detection,
    clustering, full-length and prefix dereplication, rereplication,
    reverse complementation, masking, all-vs-all pairwise global
    alignment, exact and global alignment searching, shuffling,
    subsampling and sorting. It also supports FASTQ file analysis,
    filtering, conversion and merging of paired-end reads.

    The aim of this project is to create an alternative to the USEARCH
    tool developed by Robert C. Edgar (2010).

- Source version: `vsearch-2.27.1`
- Maintainer: bacon AT NetBSD.org
- Website: https://github.com/torognes/vsearch
- License: gnu-gpl-v3
- Package history: cvs, hg, git

## Build dependencies

pkgtools/mktools devel/automake devel/autoconf devel/gmake pkgtools/cwrappers

## Runtime dependencies

(none)

## Binary packages

OS | Architecture | Version
--- | --- | ---
NetBSD 10.0 | aarch64 | vsearch-2.27.0.tgz
NetBSD 10.0 | aarch64 | vsearch-2.26.1.tgz
NetBSD 10.0 | aarch64eb | vsearch-2.27.0.tgz
NetBSD 10.0 | x86_64 | vsearch-2.27.0.tgz
NetBSD 10.0 | x86_64 | vsearch-2.26.1.tgz
NetBSD 10.0 | x86_64 | vsearch-2.27.1.tgz
NetBSD 9.0 | aarch64 | vsearch-2.27.0.tgz
NetBSD 9.0 | aarch64 | vsearch-2.26.1.tgz
NetBSD 9.0 | x86_64 | vsearch-2.27.1.tgz
NetBSD 9.0 | x86_64 | vsearch-2.26.1.tgz
NetBSD 9.0 | x86_64 | vsearch-2.27.0.tgz
NetBSD 9.3 | x86_64 | vsearch-2.27.1.tgz
NetBSD 9.3 | x86_64 | vsearch-2.27.1.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

## Available build options

(none)

## Known vulnerabilities

(no vulnerabilities known)

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.